Genetic characterization of Orobanche cumana populations from the thrace region of Turkey using microsatellite markers
Yükleniyor...
Dosyalar
Tarih
2019
Dergi Başlığı
Dergi ISSN
Cilt Başlığı
Yayıncı
Turkiye Klinikleri Journal of Medical Sciences
Erişim Hakkı
info:eu-repo/semantics/openAccess
Özet
Orobanche cumana is a parasitic plant that can lead to advanced losses in yield of agricultural lands cultivating sunflower, depending on the sunflower varieties and the level of contamination. In our study, genetic diversity of six O. cumana populations from the Thrace region of Turkey was determined with the help of eight SSR (microsatellite) loci. All SSR loci were polymorphic. A total of 23 alleles were determined for the analyzed 120 samples. Allele number of each SSR locus ranged from two to six. Mean number of alleles (N a = 2.271), effective allele number (N e = 1.667), Shannon’s information index (I = 0.547), and heterozygosity levels (H o = 0.207 and H e = 0.340) were calculated. A high proportion of the genetic variation (66%) was due to within-population variation and 34% of the diversity was due to among-population variations. Based on the UPGMA dendrogram and STRUCTURE analysis, there were two main clusters. Cluster I was classified into three groups containing four populations from the Kırklareli and Edirne regions. Two populations from Tekirdağ were in cluster II. The information obtained from this study is valuable to provide a significant contribution to studies on the genetic structure, diversity, and race evolution of O. cumana and to the developed crop breeding studies and management strategies for controlling O. cumana infestation. © TÜBİTAK.
Açıklama
Anahtar Kelimeler
Broomrape, Helianthus annuus, Molecular marker analysis, Simple sequence repeats, biomarker, breeding, genetic analysis, genetic variation, molecular analysis, parasitic plant, pollution effect, population genetics, Thrace, Turkey, Helianthus, Helianthus annuus, Orobanchaceae, Orobanche cernua var. cumana
Kaynak
Turkish Journal of Botany
WoS Q Değeri
Q3
Scopus Q Değeri
Q2
Cilt
43
Sayı
1
