Genetic diversity and molecular characterization of natural Pancratium maritimum L. populations by DNA markers

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dc.authorid0000-0002-4690-2574
dc.authorid0000-0001-8323-2509
dc.authorscopusid57197837124
dc.authorscopusid22936704800
dc.authorwosidbilgen, behiye banu/AAD-9188-2019
dc.contributor.authorElibol, Ceren
dc.contributor.authorBilgen, Behiye Banu
dc.date.accessioned2022-05-11T14:45:26Z
dc.date.available2022-05-11T14:45:26Z
dc.date.issued2017
dc.departmentFakülteler, Ziraat Fakültesi, Tarımsal Biyoteknoloji Bölümü
dc.description.abstractBulbous plants play an important role in Turkey's biodiversity due to their great potential use in various industries. Sea daffodils (Pancratium maritimum), one aspect of Turkey's biological richness, represent an important bulbous plant that generally spreads on sand dunes and can be seen only on the Mediterranean coast and on its certain beaches in our country. In this study, the genetic structure and genetic diversity of four natural P. maritimum populations have been determined by RAPD and nrSSR primers. Eight RAPD and four nrSSR loci were analyzed. All RAPD and nrSSR loci, except SSR-20, were found to be polymorphic. Genetic diversity parameters such as mean number of alleles for each nrSSR loci (N-a = 3.313), effective allele number (N-e = 2.190), Shannon's information index (I = 0.728), observed heterozygosity (H-o = 0.449) and expected heterozygosity (H-e = 0.396) were calculated. A rather high proportion of the genetic diversity (81% for nrSSR, 72% for RAPD) was due to within-population variation and the remaining part was due to variation between populations. According to the acquired UPGMA phenogram for RAPD and nrSSR data, the Igneada and Camlikoy populations, which are geographically close, are also genetically the most similar populations. The STRUCTURE analysis results supported the constructed UPGMA phenogram for the studied sea daffodil populations. The results of this study include important information about the genetic structure of the studied populations.
dc.description.sponsorshipNamik Kemal University, Scientific Research Projects UnitNamik Kemal University [NKUBAP.00.24.AR.13.20, NKUBAP.03.YL.15.005]
dc.description.sponsorshipWe appreciate Namik Kemal University, Scientific Research Projects Unit (Project No: NKUBAP.00.24.AR.13.20 and NKUBAP.03.YL.15.005), for its financial support. We also thank Petru Golban (English Language and Literature Department, Faculty of Arts and Sciences, Namik Kemal University) for improving the English of the manuscript.
dc.identifier.doi10.3906/bot-1702-35
dc.identifier.endpage578
dc.identifier.issn1300-008X
dc.identifier.issn1303-6106
dc.identifier.issue6en_US
dc.identifier.scopus2-s2.0-85035123483
dc.identifier.scopusqualityQ2
dc.identifier.startpage569
dc.identifier.urihttps://doi.org/10.3906/bot-1702-35
dc.identifier.urihttps://hdl.handle.net/20.500.11776/10043
dc.identifier.volume41
dc.identifier.wosWOS:000418290200004
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorBilgen, Behiye Banu
dc.language.isoen
dc.publisherTubitak Scientific & Technical Research Council Turkey
dc.relation.ispartofTurkish Journal of Botany
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectGenetic conservation
dc.subjectgenetic diversity
dc.subjectnrSSR
dc.subjectPancratium maritimum
dc.subjectRAPD
dc.subjectsea daffodil
dc.subjectAmaryllidaceae
dc.subjectSea
dc.subjectConservation
dc.subjectBiodiversity
dc.subjectTurkey
dc.titleGenetic diversity and molecular characterization of natural Pancratium maritimum L. populations by DNA markers
dc.typeArticle

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