Evaluation of genetic diversity and structure of Turkish water buffalo population by using 20 microsatellite markers

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dc.authorscopusid8431541400
dc.authorscopusid57200696504
dc.authorscopusid57222725264
dc.authorscopusid57222724260
dc.authorscopusid6701528877
dc.contributor.authorÖzkan Ünal, Emel
dc.contributor.authorIşık, Raziye
dc.contributor.authorŞen, Ayşe
dc.contributor.authorKuş, Elif Geyik
dc.contributor.authorSoysal, Mehmet İhsan
dc.date.accessioned2022-05-11T14:02:55Z
dc.date.available2022-05-11T14:02:55Z
dc.date.issued2021
dc.departmentFakülteler, Ziraat Fakültesi, Zootekni Bölümü
dc.departmentFakülteler, Ziraat Fakültesi, Tarımsal Biyoteknoloji Bölümü
dc.description.abstractThe present study was aimed to investigate the genetic diversity among 17 Turkish water buffalo populations. A total of 837 individuals from 17 provincial populations were genotyped, using 20 microsatellites markers. The microsatellite markers analyzed were highly polymorphic with a mean number of alleles of (7.28) ranging from 6 (ILSTS005) to 17 (ETH003). The mean observed and expected heterozygosity values across all polymorphic loci in all studied buffalo populations were 0.61 and 0.70, respectively. Observed heterozygosity varied from 0.55 (Bursa (BUR)) to 0.70 (Muş (MUS)). It was lower than expected heterozygosity in most of the populations indicating a deviation from Hardy–Weinberg equilibrium. The overall value for the polymorphic information content of noted microsatellite loci was 0.655, indicating their suitability for genetic diversity analysis in buffalo. The mean FIS value was 0.091 and all loci were observed significantly deviated from Hardy–Weinberg Equilibrium (HWE), most likely based on non-random breeding. The 17 buffalo populations were genetically less diverse as indicated by a small mean FST value (0.032 ± 0.018). The analysis of molecular variance (AMOVA) analysis indicated that about 2% of the total genetic diversity was clarified by population distinctions and 88 percent corresponded to differences among individuals. The information produced by this study can be used to establish a base of national conservation and breeding strategy of water buffalo population in Turkey. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
dc.description.sponsorshipTarimsal Araştirmalar ve Politikalar Genel Müdürlüğü, Türkiye Cumhuriyeti Tarim Ve Orman Bakanliği: TAGEM/13/AR-GE/29
dc.description.sponsorshipFunding: This research was funded by Republic of Turkey Ministry of Agriculture and Forestry General Directorate of Agricultural Research and Policies (TAGEM), grant number TAGEM/13/AR-GE/29, project leader Elif Geyik Kus¸.
dc.identifier.doi10.3390/ani11041067
dc.identifier.issn2076-2615
dc.identifier.issue4en_US
dc.identifier.scopus2-s2.0-85103820729
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.3390/ani11041067
dc.identifier.urihttps://hdl.handle.net/20.500.11776/4539
dc.identifier.volume11
dc.identifier.wosWOS:000642646200001
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorÖzkan Ünal, Emel
dc.institutionauthorIşık, Raziye
dc.institutionauthorŞen, Ayşe
dc.institutionauthorSoysal, Mehmet İhsan
dc.language.isoen
dc.publisherMDPI AG
dc.relation.ispartofAnimals
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectGenetic diversity
dc.subjectGenetic structure
dc.subjectHeterozygosity
dc.subjectMicrosatellite loci
dc.subjectTurkish water buffalo
dc.subjectadult
dc.subjectanalysis of variance
dc.subjectarticle
dc.subjectbreeding
dc.subjectfemale
dc.subjectgene frequency
dc.subjectgene structure
dc.subjectgenetic variability
dc.subjectheterozygosity
dc.subjecthuman
dc.subjecthuman experiment
dc.subjectmajor clinical study
dc.subjectmale
dc.subjectmicrosatellite marker
dc.subjectnonhuman
dc.subjectsynovial bursa
dc.subjectTurkey (republic)
dc.subjectwater buffalo
dc.titleEvaluation of genetic diversity and structure of Turkish water buffalo population by using 20 microsatellite markers
dc.typeArticle

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