Genetic characterization of native donkey (Equus asinus) populations of Turkey using microsatellite markers

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dc.authorscopusid57217292645
dc.authorscopusid26028615800
dc.authorscopusid8431541400
dc.authorscopusid55913211900
dc.authorscopusid56949758800
dc.authorscopusid36106722600
dc.authorscopusid6603553213
dc.contributor.authorYatkın, Selen
dc.contributor.authorÖzdil, Fulya
dc.contributor.authorÜnal, Emel Özkan
dc.contributor.authorGenç, Serdar
dc.contributor.authorKaplan, Selçuk
dc.contributor.authorGürcan, Eser Kemal
dc.contributor.authorSoysal, Mehmet İhsan
dc.contributor.authorArat, S.
dc.date.accessioned2022-05-11T14:02:56Z
dc.date.available2022-05-11T14:02:56Z
dc.date.issued2020
dc.departmentFakülteler, Ziraat Fakültesi, Tarımsal Biyoteknoloji Bölümü
dc.departmentFakülteler, Ziraat Fakültesi, Zootekni Bölümü
dc.description.abstractThis study presents the first insights to the genetic diversity and structure of the Turkish donkey populations. The primary objectives were to detect the main structural features of Turkish donkeys by microsatellite markers. A panel of 17 microsatellite markers was applied for genotyping 314 donkeys from 16 locations of Turkey. One hundred and forty?two alleles were identified and the number of alleles per locus ranged from 4 to 12. The highest number of alleles was observed in AHT05 (12) and the lowest in ASB02 and HTG06 (4), while ASB17 was monomorphic. The mean HO in the Turkish donkey was estimated to be 0.677, while mean HE was 0.675. The polymorphic information content (PIC) was calculated for each locus and ranged from 0.36 (locus ASB02) to 0.98 (locus AHT05), which has the highest number of alleles per locus in the present study. The average PIC in our populations was 0.696. The average coefficient of gene differentiation (GST) over the 17 loci was 0.020 ± 0.037 (p < 0.01). The GST values for single loci ranged from ?0.004 for LEX54 to 0.162 for COR082. Nei’s gene diversity index (Ht) for loci ranged from 0.445 (ASB02) to 0.890 (AHT05), with an average of 0.696. A Bayesian clustering method, the Structure software, was used for clustering algorithms of multi?locus genotypes to identify the population structure and the pattern of admixture within the populations. When the number of ancestral populations varied from K = 1 to 20, the largest change in the log of the likelihood function (?K) was when K = 2. The results for K = 2 indicate a clear separation between Clade I (KIR, CAT, KAR, MAR, SAN) and Clade II (MAL, MER, TOK, KAS, KUT, KON, ISP, ANT, MUG, AYD and KAH) populations. © 2020 by the authors. Licensee MDPI, Basel, Switzerland.
dc.description.sponsorship08/2015; Türkiye Bilimsel ve Teknolojik Araştirma Kurumu, TÜBITAK: 215O555
dc.description.sponsorshipThis research was funded by TUBITAK (The Scientific and Technological Research Council of Turkey), grant number 215O555, project leader Fulya ?zdil. Acknowledgments: This study was a part of the MSc thesis of Selen YATKIN in Tekirda? Nam?k Kemal University, Graduate School of Natural Applied Sciences. Ethical approval for this study was obtained from Tekirda? Nam?k Kemal University Animal Experiment Local Ethics Committee (NKU?HADYEK Decision No: 08/2015). The authors want to thank four anonymous reviewers for comments on this work.
dc.description.sponsorshipFunding: This research was funded by TUBITAK (The Scientific and Technological Research Council of Turkey), grant number 215O555, project leader Fulya Özdil.
dc.identifier.doi10.3390/ani10061093
dc.identifier.endpage19
dc.identifier.issn2076-2615
dc.identifier.issue6en_US
dc.identifier.scopus2-s2.0-85087039118
dc.identifier.scopusqualityQ1
dc.identifier.startpage1
dc.identifier.urihttps://doi.org/10.3390/ani10061093
dc.identifier.urihttps://hdl.handle.net/20.500.11776/4547
dc.identifier.volume10
dc.identifier.wosWOS:000550923200001
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorYatkın, Selen
dc.institutionauthorÖzdil, Fulya
dc.institutionauthorÜnal, Emel Özkan
dc.institutionauthorGenç, Serdar
dc.institutionauthorKaplan, Selçuk
dc.institutionauthorGürcan, Eser Kemal
dc.institutionauthorSoysal, Mehmet İhsan
dc.institutionauthorArat, S.
dc.language.isoen
dc.publisherMDPI AG
dc.relation.ispartofAnimals
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectDonkey
dc.subjectEquus asinus
dc.subjectGenetic diversity
dc.subjectMicrosatellites
dc.subjectMolecular markers
dc.subjectTurkey
dc.subjectallele
dc.subjectarticle
dc.subjectcladistics
dc.subjectclustering algorithm
dc.subjectcontrolled study
dc.subjectdonkey
dc.subjectgenetic variability
dc.subjectmale
dc.subjectmicrosatellite marker
dc.subjectnonhuman
dc.subjectpopulation structure
dc.subjectsoftware
dc.subjectTurkey (republic)
dc.titleGenetic characterization of native donkey (Equus asinus) populations of Turkey using microsatellite markers
dc.typeArticle

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