Relationships between Podolic cattle breeds assessed by single nucleotide polymorphisms (SNPs) genotyping

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dc.authorid0000-0003-4733-7519
dc.authorid0000-0002-9992-8102
dc.authorid0000-0001-7460-4040
dc.authorid0000-0003-1318-2125
dc.authorid0000-0001-5188-7957
dc.authorid0000-0002-7781-0592
dc.authorscopusid12778195300
dc.authorscopusid56217010700
dc.authorscopusid35485100500
dc.authorscopusid6701528877
dc.authorscopusid8431541400
dc.authorscopusid15836278800
dc.authorscopusid6701773199
dc.authorwosidvalentini, alessio/L-3970-2013
dc.authorwosidSoysal, Mehmet İhsan/ABA-4699-2020
dc.authorwosidpariset, lorraine/J-4258-2012
dc.authorwosidDunner, Susana/H-3124-2015
dc.authorwosidÜnal, Emel Özkan/ABA-3367-2020
dc.contributor.authorPariset, L.
dc.contributor.authorMariotti, M.
dc.contributor.authorNardone, A.
dc.contributor.authorSoysal, Mehmet İhsan
dc.contributor.authorÖzkan Ünal, Emel
dc.contributor.authorWilliams, J. L.
dc.contributor.authorValentini, A.
dc.date.accessioned2022-05-11T14:46:25Z
dc.date.available2022-05-11T14:46:25Z
dc.date.issued2010
dc.departmentFakülteler, Ziraat Fakültesi, Zootekni Bölümü
dc.description.abstractP>Italian Maremmana, Turkish Grey and Hungarian Grey breeds belong to the same Podolic group of cattle, have a similar conformation and recently experienced a similar demographic reduction. The aim of this study was to assess the relationship among the analysed Podolic breeds and to verify whether their genetic state reflects their history. To do so, approximately 100 single nucleotide polymorphisms (SNPs) were genotyped on individuals belonging to these breeds and compared to genotypes of individuals of two Italian beef breeds, Marchigiana and Piemontese, which underwent different selection and migration histories. Population genetic parameters such as allelic frequencies and heterozygosity values were assessed, genetic distances calculated and assignment test performed to evaluate the possibility of recent admixture between the populations. The data show that the physical similarity among the Podolic breeds examined, and particularly between Hungarian Grey and Maremmana cattle that experienced admixture in the recent past, is mainly morphological. The assignment of individuals from genotype data was achieved using Bayesian inference, confirming that the set of chosen SNPs is able to distinguish among the breeds and that the breeds are genetically distinct. Individuals of Turkish Grey breed were clearly assigned to their breed of origin for all clustering alternatives, showing that this breed can be differentiated from the others on the basis of the allelic frequencies. Remarkably, in the Turkish Grey there were differences observed between the population of Enez district, where in situ conservation studies are practised, and that of Bandirma district of Balikesir, where ex situ conservation studies are practised out of the original raising area. In conclusion, this study demonstrates that molecular data could be used to reveal an unbiased view of past events and provide the basis for a rational exploitation of livestock, suggesting appropriate cross-breeding plans based on genetic distance or breeding strategies that include the population structure.
dc.description.sponsorshipEUEuropean Commission [CT2000-0147]
dc.description.sponsorshipThe authors thank Guido Pezzali for its collaboration in Castelporziano sampling, Paolo Ciorba for technical assistance, Flora Jane Dause for help with the language and two anonymous reviewers for helpful comments. Marchigiana and Piemontese data were obtained under EU-GemQual QLRT CT2000-0147 project.
dc.identifier.doi10.1111/j.1439-0388.2010.00868.x
dc.identifier.endpage488
dc.identifier.issn0931-2668
dc.identifier.issn1439-0388
dc.identifier.issue6en_US
dc.identifier.pmid21077972
dc.identifier.scopus2-s2.0-78449266568
dc.identifier.scopusqualityQ1
dc.identifier.startpage481
dc.identifier.urihttps://doi.org/10.1111/j.1439-0388.2010.00868.x
dc.identifier.urihttps://hdl.handle.net/20.500.11776/10294
dc.identifier.volume127
dc.identifier.wosWOS:000284320900010
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorÖzkan Ünal, Emel
dc.institutionauthorSoysal, Mehmet İhsan
dc.language.isoen
dc.publisherWiley
dc.relation.ispartofJournal of Animal Breeding and Genetics
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectBayesian inference
dc.subjectdiversity
dc.subjectmigration
dc.subjectPodolic cattle
dc.subjectSNPs
dc.subjectPopulation-Structure
dc.subjectSignatures
dc.titleRelationships between Podolic cattle breeds assessed by single nucleotide polymorphisms (SNPs) genotyping
dc.typeArticle

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