A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes

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dc.authorid0000-0001-8023-1260
dc.authorid0000-0002-2459-5833
dc.authorid0000-0002-2459-5833
dc.authorid0000-0002-0336-880X
dc.authorid0000-0002-3276-561X
dc.authorid0000-0002-9102-2066
dc.authorid0000-0002-7214-3575
dc.authorscopusid7004328784
dc.authorscopusid7102707073
dc.authorscopusid7003551567
dc.authorscopusid7005760308
dc.authorscopusid7801664167
dc.authorscopusid57189216297
dc.authorscopusid23466407900
dc.authorwosidGonzález-Jaén, M. Teresa/K-2910-2014
dc.authorwosidMigheli, Quirico/K-7065-2019
dc.authorwosidBeyer, Marco/S-9197-2019
dc.authorwosidMigheli, Quirico/B-7203-2009
dc.authorwosidYli-Mattila, Tapani/AAE-3019-2022
dc.authorwosidGagkaeva, Tatiana Yu./H-7884-2013
dc.authorwosidPallez, Marine/H-5292-2019
dc.contributor.authorPasquali, Matias
dc.contributor.authorBeyer, Marco
dc.contributor.authorLogrieco, Antonio
dc.contributor.authorAudenaert, Kris
dc.contributor.authorBalmas, Virgilio
dc.contributor.authorBasler, Ryan
dc.contributor.authorVogelgsang, Susanne
dc.contributor.authorKoycu, Nagehan D.
dc.date.accessioned2022-05-11T14:43:31Z
dc.date.available2022-05-11T14:43:31Z
dc.date.issued2016
dc.departmentFakülteler, Ziraat Fakültesi, Bitki Koruma Bölümü
dc.description.abstractFusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.
dc.description.sponsorshipMinistere de l'Agriculture, de la Viticulture et de la Protection des Consommateurs-Administration des Services Techniques de l'Agriculture; M.I.U.R. Project AGROGEN (Laboratory of GENomics for traits of AGROnomic importance in durum wheat: Identification of useful genes, functional analysis and assisted selection by biological markers for the development of the national seed chain) [602/Ric]; Felix Thornley Cobbold Trust; John Oldacre Foundation; Ministry of Agriculture of the Czech RepublicMinistry of Agriculture, Czech Republic [800415]; Spanish Ministry MINECOSpanish Government [AGL201.4-53928-C2-2-R]; Ministry of Agriculture and Food, Norway; Federal Ministry of Education and Research (BMBF) (GABI-KANADA), BonnFederal Ministry of Education & Research (BMBF) [FKZ 0313711A]; German Academic Exchange Service (DAAD), BonnDeutscher Akademischer Austausch Dienst (DAAD) [A/06/92183]; Finnish Ministry of Agriculture and Forestry; Direction Generale de l'Agriculture, Direction de la Recherche [D31-3159, D31-1162, D31-7055]; P.O.R. SARDEGNA F.S.; Danish Directorate for Food, Fisheries and Agri Business [FFS05-3]; Academy of FinlandAcademy of Finland [126917, 131957, 250904, 252162, 267188, 266984]; Olvi Foundation; Turku University Foundation; CIMO travel grant; Nordic network project New Emerging Mycotoxins and Secondary Metabolites in Toxigenic Fungi of Northern Europe - Nordic Research Board [090014]
dc.description.sponsorshipThe Luxembourg institute of Science and Technology, LU, acknowledges the Ministere de l'Agriculture, de la Viticulture et de la Protection des Consommateurs-Administration des Services Techniques de l'Agriculture for financially supporting the Sentinelle project. The work on Italian strains has been financially supported through the M.I.U.R. Project AGROGEN (Laboratory of GENomics for traits of AGROnomic importance in durum wheat: Identification of useful genes, functional analysis and assisted selection by biological markers for the development of the national seed chain) (D. D. 14.03.2005 n. 602/Ric). Funding for the research of Ryan Basler was provided by Felix Thornley Cobbold Trust and the John Oldacre Foundation.; The work of JC was supported by the Ministry of Agriculture of the Czech Republic, Project No. 800415. The research of MG and PG was supported by the Spanish Ministry MINECO (AGL201.4-53928-C2-2-R). The Ministry of Agriculture and Food, Norway funded the work of IH. The research of TM was funded by the Federal Ministry of Education and Research (BMBF) (GABI-KANADA #FKZ 0313711A), Bonn and by the German Academic Exchange Service (DAAD), Bonn (code no.: A/06/92183). PP acknowledges the Finnish Ministry of Agriculture and Forestry for funding the project FinMyco on Fusarium and mycotoxins in Finland. The research of JS was funded by the Direction Generale de l'Agriculture, Direction de la Recherche (ref. D31-3159, D31-1162, D31-7055), in the framework of a project entitled Caracterization et dynamique des fusarioses sur mais en Region Wallonne. BS acknowledges support by P.O.R. SARDEGNA F.S.E. 2007-2013-Obiettivo competitivita regionale e occupazione, Asse IV Capitale umano, Linea di Attivita 1.3.1 (research project Identification of natural and natural-like molecules inhibiting mycotoxin biosynthesis by Fusaria pathogenic on cereals). UT thanks the Danish Directorate for Food, Fisheries and Agri Business grant FFS05-3 for financial support. The work of TY was financially supported by the Academy of Finland (no. 126917, 131957, 250904, 252162, 267188, and 266984), Olvi Foundation, Turku University Foundation, a CIMO travel grant to Taha Hussien, and the Nordic network project New Emerging Mycotoxins and Secondary Metabolites in Toxigenic Fungi of Northern Europe (project 090014), which was funded by the Nordic Research Board.
dc.identifier.doi10.3389/fmicb.2016.00406
dc.identifier.issn1664-302X
dc.identifier.pmid27092107
dc.identifier.scopus2-s2.0-84966322357
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.3389/fmicb.2016.00406
dc.identifier.urihttps://hdl.handle.net/20.500.11776/9632
dc.identifier.volume7
dc.identifier.wosWOS:000373502900002
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorKoycu, Nagehan D.
dc.language.isoen
dc.publisherFrontiers Media Sa
dc.relation.ispartofFrontiers in Microbiology
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectacetyldeoxynivalenol
dc.subjectchemotype
dc.subjectdatabase
dc.subjectFusarium
dc.subjectgenotype
dc.subjectmycotoxin
dc.subjectnivalenol
dc.subjecttrichothecene
dc.subjectSmall-Grain Cereals
dc.subjectHead Blight Pathogen
dc.subjectAlpha-Gene Sequences
dc.subjectSpecies Complex
dc.subjectMicrodochium-Nivale
dc.subjectFungal Pathogens
dc.subjectSoft Wheat
dc.subjectPcr Assay
dc.subjectChemotypes
dc.subjectMycotoxin
dc.titleA European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes
dc.typeArticle

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