Detection and partial molecular characterization of Plum pox virus on almond trees in Turkey

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dc.authorid0000-0002-0016-190X
dc.authorscopusid8869167100
dc.authorscopusid8869166900
dc.authorwosidILBAGI, Havva/ABA-4459-2020
dc.contributor.authorİlbağı, Havva
dc.contributor.authorÇıtır, Ahmet
dc.date.accessioned2022-05-11T14:43:30Z
dc.date.available2022-05-11T14:43:30Z
dc.date.issued2014
dc.departmentFakülteler, Ziraat Fakültesi, Bitki Koruma Bölümü
dc.description.abstractAlmond (Prunus dulcis) is one of the well known stone fruit species grown for its unripe fruits and delicious seeds in Turkey. In the Trakya region, however, some prevailing virus infections have reduced almond yields and quality. In ten districts of Trakya, 260 leaf samples were collected from affected almond trees in June 2010. DAS-ELISA assays and RT-PCR tests were employed for the identification of viruses. As a result of these detection studies, five of the 260 leaf samples gathered from symptomatic almond trees had Plum pox virus (PPV), 81 of them had Prunus necrotic ringspot virus (PNRSV), and 11 samples contained Prune dwarf virus (PDV). Only four out of 260 samples had a mixture of these viruses. Partial nucleotide sequences of five almond isolates of PPV were determined and compared with 17 other PPV isolates in databases. Computer analysis of obtained and published nucleotide sequences showed identity ranged from 75.72% to 96.87%. Of the five PPV almond isolates obtained, however, there was a close nucleotide identity of 95.82-96.61% to Turkish isolates. Phylogenetic analysis of nucleotides and amino acids showed that five PPV isolates of almond from the Trakya Region of Turkey were clustered in the same subgroup with PPV-T Turkish isolates in GenBank. Therefore we can consider almond isolates of PPV as PPV-T strain, like the two other isolates from apricot trees in Turkey.
dc.identifier.doi10.1007/s12600-014-0385-6
dc.identifier.endpage491
dc.identifier.issn0334-2123
dc.identifier.issn1876-7184
dc.identifier.issue4en_US
dc.identifier.scopus2-s2.0-84906278946
dc.identifier.scopusqualityQ2
dc.identifier.startpage485
dc.identifier.urihttps://doi.org/10.1007/s12600-014-0385-6
dc.identifier.urihttps://hdl.handle.net/20.500.11776/9625
dc.identifier.volume42
dc.identifier.wosWOS:000340601700006
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorİlbağı, Havva
dc.institutionauthorÇıtır, Ahmet
dc.language.isoen
dc.publisherSpringer
dc.relation.ispartofPhytoparasitica
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectMolecular detection
dc.subjectPhylogenetic tree
dc.subjectPPV
dc.subjectPrunus dulcis
dc.subjectCurrent Situation
dc.subjectDisease
dc.titleDetection and partial molecular characterization of Plum pox virus on almond trees in Turkey
dc.typeArticle

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