New Insights on Water Buffalo Genomic Diversity and Post-Domestication Migration Routes From Medium Density SNP Chip Data

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dc.authorid0000-0003-2850-3964
dc.authorid0000-0001-9516-8196
dc.authorid0000-0002-6526-8337
dc.authorid0000-0001-7460-4040
dc.authorid0000-0001-6244-7455
dc.authorid0000-0002-6290-8984
dc.authorid0000-0002-6773-4450
dc.authorscopusid24757901400
dc.authorscopusid56492690800
dc.authorscopusid56845595600
dc.authorscopusid6505859792
dc.authorscopusid54580551200
dc.authorscopusid57200969394
dc.authorscopusid32067578300
dc.authorwosidStella, Alessandra/AAY-7322-2020
dc.authorwosidColli, Licia/AAC-2985-2021
dc.authorwosidstella, Alessandra/ABB-1952-2021
dc.authorwosidVajana, Elia/AAH-6622-2020
dc.authorwosidGalbusera, Peter HA/D-2188-2014
dc.authorwosidUtsunomiya, Yuri Tani T/K-5214-2013
dc.authorwosidÜnal, Emel Özkan/ABA-3367-2020
dc.contributor.authorColli, Licia
dc.contributor.authorMilanesi, Marco
dc.contributor.authorVajana, Elia
dc.contributor.authorIamartino, Daniela
dc.contributor.authorBomba, Lorenzo
dc.contributor.authorPuglisi, Francesco
dc.contributor.authorAjmone-Marsan, Paolo
dc.contributor.authorSoysal, İhsan
dc.contributor.authorÖzkan Ünal, Emel|
dc.date.accessioned2022-05-11T14:46:39Z
dc.date.available2022-05-11T14:46:39Z
dc.date.issued2018
dc.departmentFakülteler, Ziraat Fakültesi, Zootekni Bölümü
dc.description.abstractThe domestic water buffalo is native to the Asian continent but through historical migrations and recent importations, nowadays has a worldwide distribution. The two types of water buffalo, i.e., river and swamp, display distinct morphological and behavioral traits, different karyotypes and also have different purposes and geographical distributions. River buffaloes from Pakistan, Iran, Turkey, Egypt, Romania, Bulgaria, Italy, Mozambique, Brazil and Colombia, and swamp buffaloes from China, Thailand, Philippines, Indonesia and Brazil were genotyped with a species-specificmedium-density 90K SNP panel. We estimated the levels of molecular diversity and described population structure, which revealed historical relationships between populations and migration events. Three distinct gene pools were identified in pure river as well as in pure swamp buffalo populations. Genomic admixture was seen in the Philippines and in Brazil, resulting from importations of animals for breed improvement. Our results were largely consistent with previous archeological, historical and molecular-based evidence for two independent domestication events for river-and swamp-type buffaloes, which occurred in the Indo-Pakistani region and close to the China/Indochina border, respectively. Based on a geographical analysis of the distribution of diversity, our evidence also indicated that the water buffalo spread out of the domestication centers followed two major divergent migration directions: river buffaloes migrated west from the Indian sub-continent while swamp buffaloes migrated from northern Indochina via an east-south-eastern route. These data suggest that the current distribution of water buffalo diversity has been shaped by the combined effects of multiple migration events occurred at different stages of the post-domestication history of the species.
dc.description.sponsorshipFondazione Romeo ed Enrica Invernizzi, Milan, Italy; Sao Paulo Research Foundation (FAPESP)Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP); Doctoral School on the Agro-Food System (Agrisystem) of the Universita Cattolica del Sacro Cuore (Italy); Universita Cattolica del S. Cuore; [2016/05787-7]
dc.description.sponsorshipWe thank Dr. Elisa Eufemi for the help provided in screening the scientific literature and other written sources. We also thank all the members of the International Buffalo Consortium. A previous version of this manuscript appeared as a chapter of the Ph. D. thesis by Vajana (2017). This work was partially supported by the Fondazione Romeo ed Enrica Invernizzi, Milan, Italy. MMi was supported by grant 2016/05787-7, Sao Paulo Research Foundation (FAPESP). EV was supported by the Doctoral School on the Agro-Food System (Agrisystem) of the Universita Cattolica del Sacro Cuore (Italy).; Financial support to the publication of this manuscript has been provided by the Linea D. 3.1 (year 2017) of the Universita Cattolica del S. Cuore within its activities of promotion and dissemination of scientific research.
dc.identifier.doi10.3389/fgene.2018.00053
dc.identifier.issn1664-8021
dc.identifier.pmid29552025
dc.identifier.scopus2-s2.0-85042706895
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.3389/fgene.2018.00053
dc.identifier.urihttps://hdl.handle.net/20.500.11776/10340
dc.identifier.volume9
dc.identifier.wosWOS:000426548500001
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorSoysal, İhsan
dc.institutionauthorÖzkan Ünal, Emel|
dc.language.isoen
dc.publisherFrontiers Media Sa
dc.relation.ispartofFrontiers in Genetics
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectriver buffalo
dc.subjectswamp buffalo
dc.subjectBubalus bubalis
dc.subjectSNP
dc.subjectgenomic diversity
dc.subjectdomestication
dc.subjectevolutionary history
dc.subjectBubalus-Bubalis Populations
dc.subjectGenetic Diversity
dc.subjectSwamp Buffalo
dc.subjectRiver Buffalo
dc.subjectF-Statistics
dc.subjectD-Loop
dc.subjectMicrosatellite
dc.subjectBreeds
dc.subjectDifferentiation
dc.subjectRegion
dc.titleNew Insights on Water Buffalo Genomic Diversity and Post-Domestication Migration Routes From Medium Density SNP Chip Data
dc.typeArticle

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