Analysis of genetic diversity among Onobrychis accessions with high agronomic performance by simple sequence repeat (SSR) markers

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dc.authoridBilgen, Behiye Banu/0000-0001-8323-2509
dc.authorscopusid57710207700
dc.authorscopusid22936704800
dc.authorscopusid57225437022
dc.contributor.authorSütçü, Tuğba Bilgen, Behiye Banu Tuna, Metin
dc.contributor.authorBilgen, Behiye Banu
dc.contributor.authorTuna, Metin
dc.date.accessioned2023-04-20T08:01:17Z
dc.date.available2023-04-20T08:01:17Z
dc.date.issued2022
dc.departmentFakülteler, Ziraat Fakültesi, Tarla Bitkileri Bölümü
dc.departmentFakülteler, Ziraat Fakültesi, Tarımsal Biyoteknoloji Bölümü
dc.description.abstractBackground Onobrychis viciifolia Scop. is a short-lived perennial cool-season legume used for forage production. It is a common native species in Asia Minor, especially in Turkey, the districts of the Caucasus, and the Caspian fringes. It can grow well in a broad range of climatic and soil types found in Asia, Europe, and North America. It is a non-bloating crop, making it suitable for use in both hay and pasture. Methods and results The aim was to assess the diversity of the 83 sainfoin genotypes selected based on their high agronomic performance from a germplasm collection evaluated in the experimental field of Tekirdag Namik Kemal University, Turkey. Ten nuclear simple sequence repeat (nSSR) primers (OVK036, OVK046, OVK094, OVK101, OVK125, OVK161, OVK174, OVM033, OVM061, and OVM125) were used in the study. All nSSR loci were found to be polymorphic and totally 92 alleles were detected. The mean observed number of alleles per locus was calculated as 9.2. Among the genetic diversity parameters, Shannon Index (I = 0.375), unbiased genetic diversity value (uh = 0.243), and mean polymorphic information content (PIC = 0.240) were calculated. The genetic distance value varied between 0.43 and 0.95. Based on the dendrogram built by the UPGMA clustering method using genetic distance values, it was observed that the studied sainfoin genotypes were divided into two main clusters, whereas the STRUCTURE analysis results had high support for three clusters. Conclusions The results obtained from this study provide important information on the genetic structures of the studied sainfoin genotypes and their genetic relationship. Therefore acquired genetic data will be useful in designing more efficient polycross nurseries, allowing open pollination of best performing and genetically diverse genotypes in the isolated conditions, which will increase genetic gain in sainfoin breeding programs.
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TuBTAK) [215O526]
dc.description.sponsorshipWe would like to appreciate The Scientific and Technological Research Council of Turkey (TuBTAK, Project No: 215O526) for their financial support.
dc.identifier.doi10.1007/s11033-022-07584-x
dc.identifier.endpage5668
dc.identifier.issn0301-4851
dc.identifier.issn1573-4978
dc.identifier.issue6en_US
dc.identifier.pmid35612778
dc.identifier.scopus2-s2.0-85130721335
dc.identifier.scopusqualityQ2
dc.identifier.startpage5659
dc.identifier.urihttps://doi.org/10.1007/s11033-022-07584-x
dc.identifier.urihttps://hdl.handle.net/20.500.11776/10843
dc.identifier.volume49
dc.identifier.wosWOS:000802075300005
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.institutionauthorSütçü, Tuğba
dc.institutionauthorBilgen, Behiye Banu
dc.institutionauthorTuna, Metin
dc.institutionauthorBilgen, Behiye Banu
dc.institutionauthorTuna, Metin
dc.language.isoen
dc.publisherSpringer
dc.relation.ispartofMolecular Biology Reports
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectGenetic Diversity
dc.subjectMicrosatellites
dc.subjectOnobrychis
dc.subjectStructure
dc.subjectUpgma
dc.subjectViciifolia Scop.
dc.subjectSainfoin
dc.subjectPopulations
dc.subjectVarieties
dc.subjectRegion
dc.titleAnalysis of genetic diversity among Onobrychis accessions with high agronomic performance by simple sequence repeat (SSR) markers
dc.typeArticle

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