Microsatellite based genetic diversity among the three water buffalo (Bubalus bubalis) populations in Turkey

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dc.authorid0000-0002-9992-8102
dc.authorid0000-0001-7460-4040
dc.authorid0000-0003-2658-7295
dc.authorscopusid8431541400
dc.authorscopusid6701528877
dc.authorscopusid55770212800
dc.authorscopusid56006734700
dc.authorscopusid6602728394
dc.authorwosidYüncü, Eren/AAH-5714-2021
dc.authorwosidSoysal, Mehmet İhsan/ABA-4699-2020
dc.authorwosidÜnal, Emel Özkan/ABA-3367-2020
dc.contributor.authorÖzkan Ünal, Emel
dc.contributor.authorSoysal, Mehmet İhsan
dc.contributor.authorYüncü, Eren
dc.contributor.authorDağtaş, Nihan Dilşad
dc.contributor.authorTogan, İnci
dc.date.accessioned2022-05-11T14:46:32Z
dc.date.available2022-05-11T14:46:32Z
dc.date.issued2014
dc.departmentFakülteler, Ziraat Fakültesi, Zootekni Bölümü
dc.description.abstractIn this study, twenty microsatellite loci were used to define genetic diversity among 56 water buffalo samples. Their somatic tissues (the skin and cartilage tissues from ears) and DNAs were deposited in Turkish Gene Banks. Samples of healthy animals were collected from three different geographic regions: Northern Turkey, North-Western Turkey and Eastern Thrace. Three (loci CSSM57, ETH3) to ten (locus CSSM47) different alleles were identified per micro-satellite locus in a total of 103 alleles. PIC values for the micro-satellite loci analysed ranged from 0.14 (CSSM32) to 0.82 (CSSM47) with a mean of 0.4945. In all of the populations for each of the loci, the observed heterozygosities (H-o) were greater than the expected heterozygosities (H-E), indicating that populations suffered from bottleneck. H-E per population ranged between 0.5359 in the Black Sea Region and 0.5208 in the Aegean-South Marmara Region. Within the population, inbreeding estimates (F-IS) was positive in only four of the 20 loci analysed. Individuals of the different geographic populations did not cluster on the neighbour joining tree which was constructed on the basis of allele sharing distances. Population differentiation was further visualized by Factorial Correspondence Analysis and determined by the pairwise estimations of fixation index (F-ST) and Nei's standard genetic distance (D-a). The results revealed that populations have inertia (as depicted by Factorial Correspondence Analysis), they are differentiated significantly but little (by pairwise F-ST values) and the least genetic distance is between Black Sea Region and Thrace Region. Comparative studies indicated that the genetic diversity of water buffalo harboured in the Gene Banks of Turkey is at the lower end of the diversity spectrum. This study thus highlights the usefulness of heterologous bovine microsatellite markers to assess the genetic variability in Anatolian water buffalo breeds. Furthermore, the results can be utilized for future breeding strategies and conservation.
dc.description.sponsorshipTURKHAYGEN-I projectTurkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK); Turkish Scientific and Technical Research CouncilTurkiye Bilimsel ve Teknolojik Arastirma Kurumu (TUBITAK) [KAMAG 106G005]
dc.description.sponsorshipResearch for this paper was supported by TURKHAYGEN-I project and the Turkish Scientific and Technical Research Council (Grant number: KAMAG 106G005). We thank Sezen Arat, Oya Akin, Bekir Ankarali, Arzu Tas Caputcu and Fatih Karakaya for the organization and collection of the water buffalo samples.
dc.identifier.doi10.7482/0003-9438-57-008
dc.identifier.issn0003-9438
dc.identifier.scopus2-s2.0-84901637900
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.7482/0003-9438-57-008
dc.identifier.urihttps://hdl.handle.net/20.500.11776/10317
dc.identifier.volume57
dc.identifier.wosWOS:000341310800002
dc.identifier.wosqualityQ4
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthorÖzkan Ünal, Emel
dc.institutionauthorSoysal, Mehmet İhsan
dc.language.isoen
dc.publisherArchiv Fur Tierzucht
dc.relation.ispartofArchiv Fur Tierzucht-Archives of Animal Breeding
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectwater buffalo
dc.subjectgenetic diversity
dc.subjectmicrosatellites
dc.subjectTurkey
dc.subjectNili-Ravi
dc.subjectDifferentiation
dc.subjectBreeds
dc.subjectIndia
dc.titleMicrosatellite based genetic diversity among the three water buffalo (Bubalus bubalis) populations in Turkey
dc.typeArticle

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