Comprehensive genome analysis of five novel flavobacteria: Flavobacterium piscisymbiosum sp. nov., Flavobacterium pisciphilum sp. nov., Flavobacterium flavipigmentatum sp. nov., Flavobacterium lipolyticum sp. nov. and Flavobacterium cupriresistens sp. nov.

Basit Öğe Kaydı
dc.contributor.authorSaticioglu, Izzet Burcin
dc.contributor.authorAy, Hilal
dc.contributor.authorAltun, Soner
dc.contributor.authorAjmi, Nihed
dc.contributor.authorGunduz, Enes Said
dc.contributor.authorGocmen, Huban
dc.contributor.authorDuman, Muhammed
dc.date.accessioned2024-10-29T17:58:29Z
dc.date.available2024-10-29T17:58:29Z
dc.date.issued2024
dc.departmentTekirdağ Namık Kemal Üniversitesi
dc.description.abstractEight isolates were obtained through a study on culture-dependent bacteria from fish farms and identified as members of the genus Flavobacterium based on pairwise analysis of the 16S rRNA gene sequences. The highest pairwise identity values were calculated as 98.8 % for strain F-30 T and Flavobacterium bizetiae, , 99.0 % for strain F-65 T and Flavobacterium branchiarum, , 98.7 % for strain F-126 T and Flavobacterium tructae, , 98.2 % for strain F323 T and Flavobacterium cupreum while 99.7 % identity level was detected for strain F-70 T and Flavobacterium geliluteum. . In addition, strains F-33, Fl-77, and F-70 T shared 100 % identical 16S rRNA genes, while strains F323 T and Fl-318 showed 99.9 % identity. A polyphasic approach including comparative analysis of wholegenome data was employed to ascertain the taxonomic provenance of the strains. In addition to the morphological, physiological, biochemical and chemotaxonomic characteristics of the strains, the overall genomerelatedness indices of dDDH and ANI below the established thresholds confirmed the classification of the strains as five novel species within the genus Flavobacterium. . The comprehensive genome analyses of the strains were also conducted to determine the biosynthetic gene clusters, virulence features and ecological distribution patterns. Based on the polyphasic characterisations, including comparative genome analyses, it is concluded that strains F-30 T , F-65 T , F-70 T , F126T T and F-323 T represent five novel species within the genus Flavobacterium for which Flavobacterium piscisymbiosum sp. nov. F-30 T (=JCM =JCM 34194 T = KCTC 82254 T ), Flavobacterium pisciphilum sp. nov. F-65 T (=JCM =JCM 34197 T = KCTC 82257 T ), Flavobacterium flavipigmentatum sp. nov. F-70 T (Fl-33 = Fl-77 = JCM 34198 T = KCTC 82258 T ), Flavobacterium lipolyticum sp. nov. F-126 T (JCM 34199 T = KCTC 82259 T ) and Flavobacterium cupriresistens sp. nov. F-323 T (Fl-318 = JCM 34200 T = KCTC 82260 T ), are proposed.
dc.description.sponsorshipResearch Fund of Bursa Uludag University [TGA-2023-1219]
dc.description.sponsorshipThis research was partial supported by The Research Fund of Bursa Uludag University (Project Number: TGA-2023-1219) and approved by the Local Ethics Commission (report 2012-14-04) . Genome sequencing was provided by MicrobesNG (http:// www.microbesng.com ) .
dc.identifier.doi10.1016/j.syapm.2024.126518
dc.identifier.issn0723-2020
dc.identifier.issn1618-0984
dc.identifier.issue4en_US
dc.identifier.pmid38761464
dc.identifier.scopus2-s2.0-85193279353
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.1016/j.syapm.2024.126518
dc.identifier.urihttps://hdl.handle.net/20.500.11776/14351
dc.identifier.volume47
dc.identifier.wosWOS:001298856700001
dc.identifier.wosqualityN/A
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherElsevier Gmbh
dc.relation.ispartofSystematic and Applied Microbiology
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectAquaculture
dc.subjectFlavobacterium
dc.subjectGenomics
dc.subjectRainbow trout
dc.subjectOncorhynchus mykiss
dc.titleComprehensive genome analysis of five novel flavobacteria: Flavobacterium piscisymbiosum sp. nov., Flavobacterium pisciphilum sp. nov., Flavobacterium flavipigmentatum sp. nov., Flavobacterium lipolyticum sp. nov. and Flavobacterium cupriresistens sp. nov.
dc.typeArticle

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayın Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu