Kurum Yazarı "Bağcı, Elife Zerrin" İçin Listeleme
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Analysis of a mathematical model of apoptosis: individual differences and malfunction in programmed cell death
Bağcı, Elife Zerrin; Sen, S. Murat; Çamurdan, Mehmet C. (Springer Heidelberg, 2013)Apoptosis is an important area of research because of its role in keeping a mature multicellular organism's number of cells constant, hence, ensuring that the organism does not have cell accumulation that may transform ... -
Bistability Analysis of an Apoptosis Model in the Presence of Nitric Oxide
Şen, S. Murat; Bağcı, Elife Zerrin; Çamurdan, Mehmet C. (Springer, 2011)Bistability in apoptosis, or programmed cell death, is crucial for the healthy functioning of multicellular organisms. The aim in this study is to show the presence of bistability in a mitochondria-dependent apoptosis model ... -
Limitations of Using Mass Action Kinetics Method in Modeling Biochemical Systems: Illustration for a Second Order Reaction
Sayıklı, Çiğdem; Bağcı, Elife Zerrin (Springer-Verlag Berlin, 2011)Mathematical models for solving the nonlinear interactions in biological systems are a major component of computational systems biology. Deterministic method that is generally employed in these models assumes that the ... -
A novel measure to analyze protein structures: Aspect ratio in protein alpha shapes
Bağcı, Elife Zerrin; Senguler-Ciftci, F.; Çiftçi, Ünver; Demir, A. (John Wiley and Sons Inc, 2021)Proteins' three-dimensional (3D) structures are analyzed traditionally using geometric descriptors such as torsional angles and inter-atomic distances. In this study a measure that is borrowed from computational geometry, ... -
Residue packing in globular and intrinsically disordered proteins
Aydinkal, R.M.; Bağcı, Elife Zerrin (John Wiley and Sons Inc., 2018)Intrinsically disordered proteins (IDPs)/regions do not have well-defined secondary and tertiary structures, however, they are functional and it is critical to gain a deep understanding of their residue packing. The shape ...